Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7335Sugar-binding domain protein; Identified by match to protein family HMM PF00532. (350 aa)    
Predicted Functional Partners:
CUS_7748
Hypothetical protein.
  
 0.990
CUS_5106
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 0.958
CUS_7923
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 0.958
CUS_7514
Conserved domain protein; Overlaps another CDS with the same product name.
  
 
 0.740
CUS_7336
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
     
 0.734
CUS_5427
Cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563.
   
 0.711
CUS_7328
Diguanylate cyclase (GGDEF) domain protein.
   
 0.704
CUS_7983
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
 
 0.606
CUS_6644
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
 
 0.571
fucU
L-fucose mutarotase; Identified by match to protein family HMM PF05025; Belongs to the RbsD / FucU family.
 
     0.554
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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