STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7343Putative ATP synthase F0, A subunit. (886 aa)    
Predicted Functional Partners:
CUS_4877
Identified by match to protein family HMM PF04138.
 
  
 0.660
CUS_7342
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.598
CUS_6076
Putative membrane protein.
  
     0.463
pnuC
Nicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528.
  
     0.451
CUS_7291
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.443
CUS_6523
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
    0.416
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.