Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_7343Putative ATP synthase F0, A subunit. (886 aa)    
Predicted Functional Partners:
CUS_4877
Identified by match to protein family HMM PF04138.
 
   
 0.635
CUS_7342
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.598
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
     
  0.572
CUS_6076
Putative membrane protein.
  
     0.463
CUS_6621
Arylsulfatase; Identified by match to protein family HMM PF00884.
  
  
  0.458
CUS_6523
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
 
 0.456
pnuC
Nicotinamide mononucleotide transporter PnuC; Identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528.
  
     0.451
CUS_5735
Hypothetical protein.
  
  
  0.446
CUS_7291
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.443
CUS_5984
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
 
 0.423
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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