CUS_7363 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7363

Hypothetical protein. (340 aa)

Predicted Functional Partners:

CUS_5533

0.946

CUS_7364

0.773

CUS_7365

0.762

CUS_7366

0.721

CUS_4675

0.703

CUS_7768

0.673

CUS_5770

0.597

CUS_5760

0.581

CUS_5318

0.499

CUS_8119

0.491

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_4675	CUS_5533	SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	0.930
CUS_4675	CUS_7363	SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.	Hypothetical protein.	0.703
CUS_4675	CUS_7365	SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.	Identified by match to protein family HMM PF00485.	0.701
CUS_5318	CUS_5760	Hypothetical protein.	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	0.432
CUS_5318	CUS_7363	Hypothetical protein.	Hypothetical protein.	0.499
CUS_5318	CUS_8119	Hypothetical protein.	Dockerin type I repeat protein.	0.774
CUS_5533	CUS_4675	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.	0.930
CUS_5533	CUS_5760	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	0.481
CUS_5533	CUS_7363	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	Hypothetical protein.	0.946
CUS_5533	CUS_7365	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	Identified by match to protein family HMM PF00485.	0.622
CUS_5533	CUS_7768	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	Putative stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.	0.651
CUS_5760	CUS_5318	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	Hypothetical protein.	0.432
CUS_5760	CUS_5533	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	0.481
CUS_5760	CUS_7363	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	Hypothetical protein.	0.581
CUS_5760	CUS_8119	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	Dockerin type I repeat protein.	0.554
CUS_5770	CUS_7363	Hypothetical protein.	Hypothetical protein.	0.597
CUS_7363	CUS_4675	Hypothetical protein.	SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.	0.703
CUS_7363	CUS_5318	Hypothetical protein.	Hypothetical protein.	0.499
CUS_7363	CUS_5533	Hypothetical protein.	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	0.946
CUS_7363	CUS_5760	Hypothetical protein.	Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.	0.581