CUS_7376 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CUS_7376

Hypothetical protein. (485 aa)

Predicted Functional Partners:

pyk

0.801

CUS_5533

0.779

CUS_7377

0.689

CUS_7219

0.658

CUS_4594

0.517

CUS_4774

0.478

CUS_4682

0.476

CUS_4370

0.458

CUS_7460

0.433

CUS_4775

0.422

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4370	CUS_4682	CUS_4370	CUS_4682	Hypothetical protein.	Identified by match to protein family HMM PF08011.	0.664
CUS_4370	CUS_4774	CUS_4370	CUS_4774	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.665
CUS_4370	CUS_4775	CUS_4370	CUS_4775	Hypothetical protein.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.625
CUS_4370	CUS_7376	CUS_4370	CUS_7376	Hypothetical protein.	Hypothetical protein.	0.458
CUS_4370	CUS_7377	CUS_4370	CUS_7377	Hypothetical protein.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.483
CUS_4594	CUS_7376	CUS_4594	CUS_7376	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Hypothetical protein.	0.517
CUS_4594	CUS_7377	CUS_4594	CUS_7377	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.513
CUS_4682	CUS_4370	CUS_4682	CUS_4370	Identified by match to protein family HMM PF08011.	Hypothetical protein.	0.664
CUS_4682	CUS_7376	CUS_4682	CUS_7376	Identified by match to protein family HMM PF08011.	Hypothetical protein.	0.476
CUS_4682	CUS_7377	CUS_4682	CUS_7377	Identified by match to protein family HMM PF08011.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.492
CUS_4774	CUS_4370	CUS_4774	CUS_4370	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.665
CUS_4774	CUS_4775	CUS_4774	CUS_4775	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.952
CUS_4774	CUS_7376	CUS_4774	CUS_7376	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.478
CUS_4774	CUS_7377	CUS_4774	CUS_7377	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.493
CUS_4775	CUS_4370	CUS_4775	CUS_4370	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.625
CUS_4775	CUS_4774	CUS_4775	CUS_4774	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.952
CUS_4775	CUS_7376	CUS_4775	CUS_7376	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.422
CUS_4775	CUS_7377	CUS_4775	CUS_7377	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.489
CUS_5533	CUS_7219	CUS_5533	CUS_7219	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	Cna protein B-type domain protein.	0.779
CUS_5533	CUS_7376	CUS_5533	CUS_7376	Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.	Hypothetical protein.	0.779