CUS_7376 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7376

Hypothetical protein. (485 aa)

Predicted Functional Partners:

CUS_5533

0.694

CUS_7377

0.688

CUS_7219

0.658

CUS_4594

0.517

CUS_4774

0.478

CUS_4682

0.476

CUS_4370

0.458

CUS_7460

0.433

CUS_4775

0.422

CUS_4399

0.418

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_4370	CUS_4682	Hypothetical protein.	Identified by match to protein family HMM PF08011.	0.664
CUS_4370	CUS_4774	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.665
CUS_4370	CUS_4775	Hypothetical protein.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.625
CUS_4370	CUS_7376	Hypothetical protein.	Hypothetical protein.	0.458
CUS_4370	CUS_7377	Hypothetical protein.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.483
CUS_4399	CUS_4594	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.419
CUS_4399	CUS_7376	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein.	0.418
CUS_4594	CUS_4399	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.419
CUS_4594	CUS_7376	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Hypothetical protein.	0.517
CUS_4594	CUS_7377	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.513
CUS_4682	CUS_4370	Identified by match to protein family HMM PF08011.	Hypothetical protein.	0.664
CUS_4682	CUS_7376	Identified by match to protein family HMM PF08011.	Hypothetical protein.	0.476
CUS_4682	CUS_7377	Identified by match to protein family HMM PF08011.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.492
CUS_4774	CUS_4370	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.665
CUS_4774	CUS_4775	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.952
CUS_4774	CUS_7376	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.478
CUS_4774	CUS_7377	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.	0.493
CUS_4775	CUS_4370	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.625
CUS_4775	CUS_4774	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.952
CUS_4775	CUS_7376	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.422