CUS_7384 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7384

ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (457 aa)

Predicted Functional Partners:

CUS_7385

0.959

CUS_6262

0.872

CUS_6290

0.871

CUS_4602

0.862

CUS_6634

0.860

CUS_7388

0.789

CUS_6318

0.623

CUS_5143

0.527

CUS_5925

0.450

CUS_7346

0.433

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_4602	CUS_7384	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.862
CUS_4602	CUS_7385	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.422
CUS_4602	CUS_7388	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.431
CUS_5143	CUS_7384	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.527
CUS_5143	CUS_7385	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.480
CUS_5143	CUS_7388	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.420
CUS_5925	CUS_7384	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.450
CUS_6262	CUS_7384	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.872
CUS_6262	CUS_7385	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.417
CUS_6262	CUS_7388	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.409
CUS_6290	CUS_7384	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.871
CUS_6290	CUS_7385	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.440
CUS_6290	CUS_7388	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.418
CUS_6318	CUS_7384	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.623
CUS_6634	CUS_7384	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.860
CUS_6634	CUS_7385	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.812
CUS_6634	CUS_7388	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.	0.743
CUS_7346	CUS_7384	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	0.433
CUS_7384	CUS_4602	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.	0.862
CUS_7384	CUS_5143	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.	0.527