Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CUS_7384ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580. (457 aa)    
Predicted Functional Partners:
CUS_7385
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.
 
     0.947
CUS_6262
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 0.862
CUS_6290
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 0.861
CUS_4602
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 0.851
CUS_6634
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 0.849
CUS_7388
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01381.
 
     0.725
CUS_6318
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397.
 
 0.594
CUS_5143
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.
 
 0.490
CUS_5925
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
 
  0.428
CUS_7514
Conserved domain protein; Overlaps another CDS with the same product name.
    
  0.424
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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