Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7389Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. (398 aa)    
Predicted Functional Partners:
CUS_6213
Hypothetical protein.
 
  
 0.645
CUS_6746
Hypothetical protein.
  
     0.568
CUS_7390
Conserved domain protein.
     
 0.515
CUS_6228
PHP domain protein; Identified by match to protein family HMM PF02811.
  
     0.468
CUS_7891
Hypothetical protein.
  
     0.456
CUS_6602
Hypothetical protein.
  
     0.445
CUS_5209
Conserved domain protein.
  
     0.428
CUS_7237
CDP-alcohol phosphatidyltransferase; Identified by match to protein family HMM PF01066.
    
  0.424
psd
Phosphatidylserine decarboxylase; Identified by match to protein family HMM PF02666; match to protein family HMM TIGR00163; Belongs to the phosphatidylserine decarboxylase family.
    
  0.421
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.416
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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