Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_7397Dockerin type I repeat protein. (763 aa)    
Predicted Functional Partners:
CUS_5770
Hypothetical protein.
   
 0.845
CUS_5441
Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.
   
 0.828
CUS_5680
Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.
   
 0.828
CUS_6049
Conserved domain protein.
   
 0.828
CUS_8076
Putative cellulose 1,4-beta-cellobiosidase; Identified by match to protein family HMM PF02011.
   
 0.828
CUS_7715
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.826
CUS_5444
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF01839.
  
 0.789
CUS_6119
Putative cellulase 1; Identified by match to protein family HMM PF00041; match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
 0.789
CUS_6909
Putative cellulase 1; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
 0.789
CUS_7090
Putative endoglucanase C; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
 0.789
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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