STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7433Dockerin type I repeat protein; Identified by match to protein family HMM PF00404. (391 aa)    
Predicted Functional Partners:
CUS_7541
Conserved domain protein.
  
     0.774
CUS_4964
Conserved domain protein.
  
     0.772
CUS_7432
Conserved domain protein.
 
    
0.748
CUS_5377
Putative lipoprotein.
  
     0.719
CUS_5869
Putative lipoprotein.
  
     0.708
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.588
CUS_7435
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
       0.588
CUS_4969
Hypothetical protein.
  
     0.464
CUS_7436
Hypothetical protein.
       0.407
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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