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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7455ABC-2 type transporter; Identified by match to protein family HMM PF01061. (378 aa)    
Predicted Functional Partners:
CUS_7457
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.964
CUS_7456
Conserved domain protein.
 
     0.959
CUS_6569
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
  
 0.823
CUS_7153
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
 
   
 0.681
CUS_7853
Identified by match to protein family HMM PF00881.
 
  
 0.670
CUS_4591
Identified by match to protein family HMM PF00881.
  
  
 0.617
CUS_6451
Identified by match to protein family HMM PF00881.
  
  
 0.617
CUS_7231
Identified by match to protein family HMM PF00881.
  
  
 0.617
CUS_6895
Conserved domain protein.
  
     0.611
CUS_5005
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.575
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.