Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7456Conserved domain protein. (377 aa)    
Predicted Functional Partners:
CUS_7457
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
  0.969
CUS_7455
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
     0.957
CUS_6569
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
  
 0.809
CUS_7153
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
 
   
 0.665
CUS_6895
Conserved domain protein.
  
     0.569
CUS_7853
Identified by match to protein family HMM PF00881.
 
    0.549
CUS_5005
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.543
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
  
 0.523
CUS_6885
ABC-2 type transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01061.
  
 
 0.512
CUS_7471
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.
 
  
 0.507
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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