Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nspCCarboxynorspermidine decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047. (381 aa)    
Predicted Functional Partners:
CUS_7567
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
 
 
 0.974
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family.
  
 0.830
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
  
 0.806
CUS_7496
Hypothetical protein.
   
   0.596
CUS_7919
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
   
 0.575
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.561
CUS_7361
Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01817.
     
 0.531
CUS_7495
Hypothetical protein; Identified by glimmer; putative.
       0.495
CUS_7497
Hypothetical protein.
       0.495
cotJC
cotJC protein; Identified by match to protein family HMM PF05067.
       0.495
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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