CUS_7513 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7513

Dockerin type I repeat protein; Identified by match to protein family HMM PF00404. (874 aa)

Predicted Functional Partners:

CUS_6911

0.581

CUS_5255

0.578

CUS_7363

0.561

CUS_5170

0.533

nifJ

0.515

CUS_7022

0.448

pheT

0.416

CUS_5001

0.401

CUS_6112

0.401

CUS_6446

0.401

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5001	CUS_7513	CUS_5001	CUS_7513	Hypothetical protein.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.401
CUS_5170	CUS_7513	CUS_5170	CUS_7513	CotH protein; Identified by match to protein family HMM PF08757.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.533
CUS_5255	CUS_7513	CUS_5255	CUS_7513	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02368.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.578
CUS_6112	CUS_7513	CUS_6112	CUS_7513	Ubiquitin family; Identified by match to protein family HMM PF00240.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.401
CUS_6446	CUS_7513	CUS_6446	CUS_7513	Hypothetical protein.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.401
CUS_6911	CUS_7513	CUS_6911	CUS_7513	Putative phage head-tail adaptor; Identified by match to protein family HMM PF00404.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.581
CUS_7022	CUS_7513	CUS_7022	CUS_7513	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF08757.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.448
CUS_7363	CUS_7513	CUS_7363	CUS_7513	Hypothetical protein.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.561
CUS_7513	CUS_5001	CUS_7513	CUS_5001	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Hypothetical protein.	0.401
CUS_7513	CUS_5170	CUS_7513	CUS_5170	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	CotH protein; Identified by match to protein family HMM PF08757.	0.533
CUS_7513	CUS_5255	CUS_7513	CUS_5255	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02368.	0.578
CUS_7513	CUS_6112	CUS_7513	CUS_6112	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Ubiquitin family; Identified by match to protein family HMM PF00240.	0.401
CUS_7513	CUS_6446	CUS_7513	CUS_6446	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Hypothetical protein.	0.401
CUS_7513	CUS_6911	CUS_7513	CUS_6911	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Putative phage head-tail adaptor; Identified by match to protein family HMM PF00404.	0.581
CUS_7513	CUS_7022	CUS_7513	CUS_7022	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF08757.	0.448
CUS_7513	CUS_7363	CUS_7513	CUS_7363	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Hypothetical protein.	0.561
CUS_7513	nifJ	CUS_7513	CUS_6517	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	0.515
CUS_7513	pheT	CUS_7513	CUS_7019	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.416
nifJ	CUS_7513	CUS_6517	CUS_7513	Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.515
pheT	CUS_7513	CUS_7019	CUS_7513	phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.416