STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7514Conserved domain protein; Overlaps another CDS with the same product name. (471 aa)    
Predicted Functional Partners:
CUS_5143
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.
 
 
 0.868
CUS_6661
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
 
 0.848
CUS_7335
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
 
 0.848
CUS_7759
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.
     
 0.824
CUS_7515
Conserved domain protein; Overlaps another CDS with the same product name.
       0.773
CUS_6634
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.772
CUS_6290
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.743
CUS_4602
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.737
CUS_6637
Identified by match to protein family HMM PF04647.
 
 
 0.723
CUS_7516
Hypothetical protein; Identified by glimmer; putative.
       0.682
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.