STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7527Peptidase, M23 family; Identified by match to protein family HMM PF01551. (622 aa)    
Predicted Functional Partners:
CUS_7524
Efflux ABC transporter, permease protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.778
CUS_6572
Peptidase, M23 family.
  
     0.766
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.741
CUS_7525
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
 
    
0.619
CUS_7775
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
  
     0.604
CUS_7528
Hypothetical protein; Identified by glimmer; putative.
       0.550
CUS_4675
SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.
 
   
 0.528
CUS_6551
Conserved domain protein.
 
  
  0.453
CUS_7522
Hypothetical protein.
       0.451
CUS_6548
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
 
   
 0.446
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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