STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7537Hypothetical protein; Identified by glimmer; putative. (70 aa)    
Predicted Functional Partners:
CUS_7538
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5105
Conserved domain protein.
  
     0.611
CUS_8019
Conserved domain protein.
  
     0.569
CUS_4583
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.507
CUS_7536
Pilin isopeptide linkage domain protein; Identified by match to protein family HMM TIGR03786.
       0.474
CUS_6181
Transcriptional regulator, TetR family.
  
     0.465
CUS_5421
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.435
CUS_5740
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.413
CUS_5422
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.401
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.