STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7577Methyltransferase domain protein; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242. (201 aa)    
Predicted Functional Partners:
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
    
 0.887
psd
Phosphatidylserine decarboxylase; Identified by match to protein family HMM PF02666; match to protein family HMM TIGR00163; Belongs to the phosphatidylserine decarboxylase family.
     
 0.878
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
 
 
 0.807
CUS_7578
5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C).
       0.773
CUS_7576
Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.
     
 0.753
CUS_7579
Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.
       0.570
CUS_4298
Methyltransferase domain protein; Identified by match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242.
 
     0.439
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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