CUS_7579 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7579

Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403. (73 aa)

Predicted Functional Partners:

cadA

0.940

CUS_5592

0.799

CUS_5991

0.792

CUS_7576

0.771

CUS_6749

0.754

CUS_4733

0.640

CUS_7577

0.570

CUS_7578

0.570

rplN

0.554

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4733	CUS_5991	CUS_4733	CUS_5991	Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.747
CUS_4733	CUS_7579	CUS_4733	CUS_7579	Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.	Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.	0.640
CUS_5592	CUS_5991	CUS_5592	CUS_5991	Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.820
CUS_5592	CUS_7576	CUS_5592	CUS_7576	Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	0.771
CUS_5592	CUS_7579	CUS_5592	CUS_7579	Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.	Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.	0.799
CUS_5991	CUS_4733	CUS_5991	CUS_4733	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.	0.747
CUS_5991	CUS_5592	CUS_5991	CUS_5592	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.	0.820
CUS_5991	CUS_6749	CUS_5991	CUS_6749	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Putative membrane protein.	0.754
CUS_5991	CUS_7576	CUS_5991	CUS_7576	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	0.573
CUS_5991	CUS_7579	CUS_5991	CUS_7579	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.	0.792
CUS_5991	cadA	CUS_5991	CUS_7580	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Cadmium-exporting ATPase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.	0.809
CUS_5991	rplN	CUS_5991	CUS_6504	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.554
CUS_6749	CUS_5991	CUS_6749	CUS_5991	Putative membrane protein.	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.754
CUS_6749	CUS_7579	CUS_6749	CUS_7579	Putative membrane protein.	Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.	0.754
CUS_7576	CUS_5592	CUS_7576	CUS_5592	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.	0.771
CUS_7576	CUS_5991	CUS_7576	CUS_5991	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.573
CUS_7576	CUS_7577	CUS_7576	CUS_7577	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	Methyltransferase domain protein; Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.753
CUS_7576	CUS_7578	CUS_7576	CUS_7578	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C).	0.752
CUS_7576	CUS_7579	CUS_7576	CUS_7579	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.	0.771
CUS_7576	cadA	CUS_7576	CUS_7580	Putative cadmium efflux system accessory protein; Identified by match to protein family HMM PF01022.	Cadmium-exporting ATPase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.	0.933