Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_7596Hypothetical protein; Identified by glimmer; putative. (405 aa)    
Predicted Functional Partners:
CUS_6686
Beta-mannanase/endoglucanase A domain protein.
  
  
  0.623
CUS_7715
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.561
CUS_7597
Conserved domain protein.
       0.538
CUS_7595
Cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563.
       0.457
CUS_6906
Identified by match to protein family HMM PF00041; match to protein family HMM PF00657; match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.443
CUS_7090
Putative endoglucanase C; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
     0.414
CUS_5680
Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.
 
  
  0.411
CUS_6909
Putative cellulase 1; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
     0.408
CUS_7783
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; match to protein family HMM PF02018.
 
     0.404
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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