Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_7600Phage terminase, large subunit, PBSX family; Identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547. (419 aa)    
Predicted Functional Partners:
CUS_7601
Hypothetical protein; Identified by glimmer; putative.
 
     0.906
CUS_7602
Hypothetical protein; Identified by glimmer; putative.
 
     0.906
CUS_7599
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.890
CUS_7605
Hypothetical protein; Identified by glimmer; putative.
 
     0.866
CUS_7598
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5706
Conserved domain protein.
  
     0.712
CUS_7304
Ribosomal protein L7Ae; Identified by match to protein family HMM PF01248.
  
     0.607
CUS_5248
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.601
CUS_6382
Conserved domain protein.
  
     0.522
CUS_6749
Putative membrane protein.
  
     0.520
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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