CUS_7600 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7600

Phage terminase, large subunit, PBSX family; Identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547. (419 aa)

Predicted Functional Partners:

CUS_7601

0.911

CUS_7602

0.911

CUS_7599

0.908

CUS_7605

0.878

CUS_7598

0.773

CUS_5706

0.712

CUS_7304

0.607

CUS_5248

0.601

CUS_6382

0.522

CUS_7496

0.521

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5248	CUS_5706	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Conserved domain protein.	0.758
CUS_5248	CUS_6382	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Conserved domain protein.	0.741
CUS_5248	CUS_7304	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Ribosomal protein L7Ae; Identified by match to protein family HMM PF01248.	0.747
CUS_5248	CUS_7496	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Hypothetical protein.	0.705
CUS_5248	CUS_7600	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Phage terminase, large subunit, PBSX family; Identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547.	0.601
CUS_5248	CUS_7601	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Hypothetical protein; Identified by glimmer; putative.	0.760
CUS_5248	CUS_7602	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Hypothetical protein; Identified by glimmer; putative.	0.753
CUS_5248	CUS_7605	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	Hypothetical protein; Identified by glimmer; putative.	0.747
CUS_5706	CUS_5248	Conserved domain protein.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.758
CUS_5706	CUS_6382	Conserved domain protein.	Conserved domain protein.	0.477
CUS_5706	CUS_7304	Conserved domain protein.	Ribosomal protein L7Ae; Identified by match to protein family HMM PF01248.	0.668
CUS_5706	CUS_7496	Conserved domain protein.	Hypothetical protein.	0.431
CUS_5706	CUS_7600	Conserved domain protein.	Phage terminase, large subunit, PBSX family; Identified by match to protein family HMM PF03237; match to protein family HMM TIGR01547.	0.712
CUS_5706	CUS_7601	Conserved domain protein.	Hypothetical protein; Identified by glimmer; putative.	0.750
CUS_5706	CUS_7602	Conserved domain protein.	Hypothetical protein; Identified by glimmer; putative.	0.751
CUS_5706	CUS_7605	Conserved domain protein.	Hypothetical protein; Identified by glimmer; putative.	0.750
CUS_6382	CUS_5248	Conserved domain protein.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.741
CUS_6382	CUS_5706	Conserved domain protein.	Conserved domain protein.	0.477
CUS_6382	CUS_7304	Conserved domain protein.	Ribosomal protein L7Ae; Identified by match to protein family HMM PF01248.	0.612
CUS_6382	CUS_7496	Conserved domain protein.	Hypothetical protein.	0.754