STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7614Identified by match to protein family HMM PF03629. (498 aa)    
Predicted Functional Partners:
CUS_6229
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
 
     0.677
CUS_6911
Putative phage head-tail adaptor; Identified by match to protein family HMM PF00404.
  
 
   0.590
CUS_5821
Hypothetical protein; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family.
 
     0.586
CUS_5611
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
  
  0.571
CUS_6822
Hypothetical protein.
  
     0.568
CUS_5001
Hypothetical protein.
  
 
   0.551
CUS_6446
Hypothetical protein.
  
 
   0.547
CUS_4654
Putative esterase; Identified by match to protein family HMM PF00756.
  
   
 0.537
CUS_5444
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF01839.
  
 
   0.506
CUS_6049
Conserved domain protein.
  
  0.506
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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