STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7620CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464. (368 aa)    
Predicted Functional Partners:
CUS_7619
Hypothetical protein; Identified by glimmer; putative.
 
    0.816
CUS_5336
Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
 
  
 0.791
CUS_7618
Conserved domain protein.
       0.773
rfbB
O-antigen ABC transporter, ATP-binding protein RfbB; Identified by match to protein family HMM PF00005.
 
 
 0.599
CUS_7279
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464.
 
 
0.582
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.555
CUS_7074
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.532
CUS_5638
AP2 domain protein; Identified by match to protein family HMM PF00847.
  
     0.493
CUS_6881
Hypothetical protein.
 
  
 0.478
CUS_5333
Identified by match to protein family HMM PF04991.
 
     0.443
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.