Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_7654Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family. (466 aa)    
Predicted Functional Partners:
CUS_7653
Carboxylesterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family.
 
   
 0.848
CUS_5883
Putative lipoprotein.
  
     0.714
CUS_5988
Glycosyl hydrolase family 8; Identified by match to protein family HMM PF01270.
 
     0.686
CUS_4932
Ferredoxin; Identified by match to protein family HMM PF00037.
   
   0.680
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
 
 0.661
CUS_6903
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF00652.
  
  
  0.641
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.630
CUS_4663
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
  
  0.565
xyl43A
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
  
  
  0.552
CUS_7030
Putative lipoprotein; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.552
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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