STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7680Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. (411 aa)    
Predicted Functional Partners:
cooF
Identified by match to protein family HMM PF00037.
 
  
 0.981
CUS_7646
Rubredoxin; Identified by match to protein family HMM PF00301; match to protein family HMM PF01613.
  
 0.974
CUS_8147
Rubredoxin; Identified by match to protein family HMM PF00301.
  
 0.963
CUS_7679
Identified by match to protein family HMM PF01493.
 
   
 0.957
CUS_7683
Class II glutamine amidotransferase; Identified by match to protein family HMM PF00310.
 
  
 0.957
CUS_7682
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01645; Belongs to the glutamate synthase family.
 
  
 0.950
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
 
 0.922
CUS_6682
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
 
  
 0.878
cooS
Carbon-monoxide dehydrogenase, catalytic subunit.
 
 
 0.871
glnA
Glutamine synthetase, beta-grasp domain protein; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.
 
  
 0.868
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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