CUS_7690 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7690

Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557. (193 aa)

Predicted Functional Partners:

CUS_6084

0.767

CUS_6622

0.754

CUS_6548

0.734

CUS_7775

0.714

CUS_6971

0.713

CUS_7689

0.559

CUS_6184

0.537

CUS_6552

0.499

spoIIP

0.429

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_6084	CUS_6548	CUS_6084	CUS_6548	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	0.734
CUS_6084	CUS_6622	CUS_6084	CUS_6622	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02557.	0.889
CUS_6084	CUS_6971	CUS_6084	CUS_6971	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.879
CUS_6084	CUS_7690	CUS_6084	CUS_7690	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	0.767
CUS_6084	CUS_7775	CUS_6084	CUS_7775	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.	0.879
CUS_6184	CUS_7690	CUS_6184	CUS_7690	LD-carboxypeptidase; Identified by match to protein family HMM PF02016.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	0.537
CUS_6548	CUS_6084	CUS_6548	CUS_6084	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	0.734
CUS_6548	CUS_6552	CUS_6548	CUS_6552	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.	0.995
CUS_6548	CUS_6622	CUS_6548	CUS_6622	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02557.	0.734
CUS_6548	CUS_6971	CUS_6548	CUS_6971	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.849
CUS_6548	CUS_7690	CUS_6548	CUS_7690	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	0.734
CUS_6548	CUS_7775	CUS_6548	CUS_7775	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.	0.983
CUS_6548	spoIIP	CUS_6548	CUS_7691	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867.	0.481
CUS_6552	CUS_6548	CUS_6552	CUS_6548	Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	0.995
CUS_6552	CUS_6971	CUS_6552	CUS_6971	Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.507
CUS_6552	CUS_7690	CUS_6552	CUS_7690	Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	0.499
CUS_6552	CUS_7775	CUS_6552	CUS_7775	Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.	Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.	0.744
CUS_6622	CUS_6084	CUS_6622	CUS_6084	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02557.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.	0.889
CUS_6622	CUS_6548	CUS_6622	CUS_6548	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02557.	Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.	0.734
CUS_6622	CUS_6971	CUS_6622	CUS_6971	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02557.	Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.879