Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoIIPStage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867. (375 aa)    
Predicted Functional Partners:
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
  
   
 0.852
spoIVA
Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.
 
   
 0.847
CUS_7813
Conserved domain protein.
  
   
 0.844
CUS_7808
Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.
  
  
 0.829
spoIIID
Stage III sporulation protein D.
  
  
 0.820
CUS_7806
Putative stage III sporulation protein AA.
  
   
 0.814
CUS_7812
Putative stage III sporulation protein AG.
  
  
 0.809
CUS_7810
Putative stage III sporulation protein AE.
  
   
 0.806
spoIVB
SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
  
   
 0.789
CUS_6320
Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.
  
   
 0.780
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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