STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7707Identified by match to protein family HMM PF00156. (225 aa)    
Predicted Functional Partners:
CUS_4913
Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
 
  
 0.889
CUS_7657
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368.
 
  
 0.803
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
 
 
 0.792
CUS_7450
Putative DNA protecting protein DprA; Identified by match to protein family HMM PF02481.
 
 
 0.778
CUS_5104
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.733
CUS_5287
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.733
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
  
    0.709
CUS_6011
Phosphoribosyl transferase domain protein; Identified by match to protein family HMM PF00156.
   
  
 0.690
CUS_4464
Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.
   
    0.683
CUS_7059
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF08495; match to protein family HMM TIGR00254.
  
    0.662
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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