spoIIID protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

spoIIID

Stage III sporulation protein D. (88 aa)

Predicted Functional Partners:

CUS_7810

0.925

CUS_6320

0.883

spoIVA

0.883

CUS_5966

0.872

CUS_7806

0.861

CUS_7808

0.853

spoIIP

0.851

CUS_5685

0.834

CUS_7812

0.819

CUS_4878

0.811

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4878	CUS_5685	CUS_4878	CUS_5685	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	0.774
CUS_4878	CUS_5966	CUS_4878	CUS_5966	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	0.834
CUS_4878	CUS_6320	CUS_4878	CUS_6320	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.	0.814
CUS_4878	CUS_7806	CUS_4878	CUS_7806	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Putative stage III sporulation protein AA.	0.794
CUS_4878	CUS_7808	CUS_4878	CUS_7808	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.	0.719
CUS_4878	CUS_7810	CUS_4878	CUS_7810	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Putative stage III sporulation protein AE.	0.518
CUS_4878	CUS_7812	CUS_4878	CUS_7812	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Putative stage III sporulation protein AG.	0.602
CUS_4878	spoIIID	CUS_4878	CUS_7709	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Stage III sporulation protein D.	0.811
CUS_4878	spoIIP	CUS_4878	CUS_7691	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867.	0.739
CUS_4878	spoIVA	CUS_4878	CUS_7585	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.	0.835
CUS_5685	CUS_4878	CUS_5685	CUS_4878	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	0.774
CUS_5685	CUS_5966	CUS_5685	CUS_5966	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	0.845
CUS_5685	CUS_6320	CUS_5685	CUS_6320	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.	0.824
CUS_5685	CUS_7806	CUS_5685	CUS_7806	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Putative stage III sporulation protein AA.	0.813
CUS_5685	CUS_7808	CUS_5685	CUS_7808	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.	0.768
CUS_5685	CUS_7810	CUS_5685	CUS_7810	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Putative stage III sporulation protein AE.	0.574
CUS_5685	CUS_7812	CUS_5685	CUS_7812	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Putative stage III sporulation protein AG.	0.648
CUS_5685	spoIIID	CUS_5685	CUS_7709	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Stage III sporulation protein D.	0.834
CUS_5685	spoIIP	CUS_5685	CUS_7691	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Stage II sporulation protein P; Identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867.	0.782
CUS_5685	spoIVA	CUS_5685	CUS_7585	Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.	Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.	0.840