STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7728Hypothetical protein. (136 aa)    
Predicted Functional Partners:
CUS_7727
Flavin reductase; Identified by match to protein family HMM PF02525; match to protein family HMM PF03358.
       0.746
CUS_7726
Hypothetical protein.
       0.716
CUS_7725
Hypothetical protein; Identified by glimmer; putative.
       0.696
CUS_7724
Identified by match to protein family HMM PF00817.
       0.656
CUS_4767
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
  
     0.601
CUS_7723
Hypothetical protein; Identified by glimmer; putative.
       0.539
CUS_5666
Conserved domain protein.
  
     0.498
CUS_4562
Plasmid recombination enzyme; Identified by match to protein family HMM PF01076.
  
     0.431
CUS_5661
Putative lipoprotein.
  
     0.426
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.