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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7747CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (224 aa)    
Predicted Functional Partners:
CUS_7748
Hypothetical protein.
     
 0.613
CUS_7749
Histidine kinase A domain protein; Identified by match to protein family HMM PF00512.
  
    0.588
CUS_7750
Putative sensory transduction protein RegX3; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.586
CUS_7751
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.471
CUS_7752
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
    0.461
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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