Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_7752Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (793 aa)    
Predicted Functional Partners:
CUS_7751
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.989
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
  
 0.933
CUS_5415
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.922
CUS_7748
Hypothetical protein.
 
 
 0.920
CUS_6098
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.913
CUS_7749
Histidine kinase A domain protein; Identified by match to protein family HMM PF00512.
 
   
 0.907
CUS_4702
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.862
CUS_5172
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.862
CUS_5313
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.862
CUS_5507
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.862
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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