STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7768Putative stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family. (888 aa)    
Predicted Functional Partners:
CUS_6557
POTRA domain protein, FtsQ-type; Essential cell division protein.
   
 
 0.872
CUS_7769
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
 
  
 0.839
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
  
 
 0.829
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
  
 0.807
CUS_5001
Hypothetical protein.
    
 
 0.803
CUS_5170
CotH protein; Identified by match to protein family HMM PF08757.
    
 
 0.803
CUS_5255
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02368.
    
 
 0.803
CUS_6112
Ubiquitin family; Identified by match to protein family HMM PF00240.
    
 
 0.803
CUS_6446
Hypothetical protein.
    
 
 0.803
CUS_6911
Putative phage head-tail adaptor; Identified by match to protein family HMM PF00404.
    
 
 0.803
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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