Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7780Fibronectin type III domain protein; Identified by match to protein family HMM PF00041. (935 aa)    
Predicted Functional Partners:
CUS_6968
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
     0.705
CUS_5681
Mannan endo-1,4-beta-mannosidase domain protein; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.700
CUS_6391
Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.
  
     0.688
CUS_7090
Putative endoglucanase C; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
     0.668
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.648
CUS_5441
Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.
  
     0.643
CUS_5603
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
     0.639
fabZ
(3R)-hydroxymyristoyl-ACP dehydratase; Identified by match to protein family HMM PF07977.
  
 
 0.635
CUS_6610
GDSL-like protein.
  
     0.624
CUS_7882
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.
  
     0.622
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.