STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7789Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase. (1115 aa)    
Predicted Functional Partners:
CUS_7790
Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
 
 0.999
CUS_6352
Identified by match to protein family HMM PF04816.
 
     0.634
CUS_5534
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023.
  
     0.597
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.563
CUS_7788
Hypothetical protein; Identified by glimmer; putative.
       0.541
CUS_7791
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960.
       0.519
CUS_7792
Radical SAM-linked protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR03936.
       0.519
CUS_6152
Exonuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.
 
  
 0.470
CUS_7020
Identified by match to protein family HMM PF06135; Belongs to the UPF0297 family.
  
     0.469
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.453
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.