CUS_7791 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7791

Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960. (621 aa)

Predicted Functional Partners:

CUS_7792

0.983

CUS_7787

0.606

rplS

0.521

CUS_7789

0.519

CUS_7790

0.519

CUS_7786

0.484

CUS_5719

0.464

CUS_5403

0.459

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5403	CUS_7791	CUS_5403	CUS_7791	Identified by match to protein family HMM PF04327.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960.	0.459
CUS_5403	rplS	CUS_5403	CUS_7793	Identified by match to protein family HMM PF04327.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.587
CUS_5719	CUS_7791	CUS_5719	CUS_7791	Hypothetical protein; Identified by glimmer; putative.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960.	0.464
CUS_5719	CUS_7792	CUS_5719	CUS_7792	Hypothetical protein; Identified by glimmer; putative.	Radical SAM-linked protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR03936.	0.417
CUS_7786	CUS_7787	CUS_7786	CUS_7787	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	0.981
CUS_7786	CUS_7789	CUS_7786	CUS_7789	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	0.425
CUS_7786	CUS_7790	CUS_7786	CUS_7790	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.	0.439
CUS_7786	CUS_7791	CUS_7786	CUS_7791	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960.	0.484
CUS_7786	CUS_7792	CUS_7786	CUS_7792	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	Radical SAM-linked protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR03936.	0.475
CUS_7787	CUS_7786	CUS_7787	CUS_7786	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	0.981
CUS_7787	CUS_7789	CUS_7787	CUS_7789	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	0.447
CUS_7787	CUS_7790	CUS_7787	CUS_7790	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.	0.505
CUS_7787	CUS_7791	CUS_7787	CUS_7791	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960.	0.606
CUS_7787	CUS_7792	CUS_7787	CUS_7792	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	Radical SAM-linked protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR03936.	0.536
CUS_7789	CUS_7786	CUS_7789	CUS_7786	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	0.425
CUS_7789	CUS_7787	CUS_7789	CUS_7787	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	0.447
CUS_7789	CUS_7790	CUS_7789	CUS_7790	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.	0.999
CUS_7789	CUS_7791	CUS_7789	CUS_7791	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03960.	0.519
CUS_7789	CUS_7792	CUS_7789	CUS_7792	Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.	Radical SAM-linked protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR03936.	0.519
CUS_7790	CUS_7786	CUS_7790	CUS_7786	Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.	Vitamin B12 dependent methionine synthase, activation domain protein; Identified by match to protein family HMM PF02965.	0.439