Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_7809Putative stage III sporulation protein AD. (128 aa)    
Predicted Functional Partners:
CUS_7810
Putative stage III sporulation protein AE.
 
  
 0.993
CUS_7808
Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.
 
  
 0.992
CUS_7806
Putative stage III sporulation protein AA.
 
  
 0.982
CUS_7812
Putative stage III sporulation protein AG.
 
  
 0.960
spoIVA
Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.
  
  
 0.923
CUS_7813
Conserved domain protein.
 
  
 0.902
spoIIID
Stage III sporulation protein D.
  
  
 0.799
spoIVB
SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
 
   
 0.790
spoVAC
Stage V sporulation protein AC; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838.
  
   
 0.772
spoVAD
Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.
  
   
 0.771
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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