STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7872SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145. (320 aa)    
Predicted Functional Partners:
hflB
ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.967
CUS_7871
Nodulation efficiency protein NfeD; Identified by match to protein family HMM PF01957.
 
  
 0.932
CUS_4443
Hypothetical protein.
  
  
 0.628
CUS_5977
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF05193; overlaps another CDS with the same product name.
   
 0.579
CUS_5978
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; overlaps another CDS with the same product name.
   
 0.579
CUS_7873
Pentapeptide repeat protein; Identified by match to protein family HMM PF00805.
     
 0.534
CUS_7874
Identified by match to protein family HMM TIGR02452.
       0.518
CUS_4979
Putative stage III sporulation protein J; Identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592.
  
 
 0.447
CUS_7311
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
   0.416
CUS_5343
Putative calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.
    
 
 0.401
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.