CUS_7883 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7883

Hypothetical protein. (526 aa)

Predicted Functional Partners:

CUS_7882

0.912

CUS_7884

0.863

CUS_7992

0.735

CUS_5603

0.726

CUS_5194

0.723

CUS_7991

0.716

CUS_7993

0.703

CUS_5084

0.699

CUS_5429

0.699

CUS_7989

0.686

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5084	CUS_5194	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	0.675
CUS_5084	CUS_5429	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	FMN-binding domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF04205; match to protein family HMM PF07581.	0.681
CUS_5084	CUS_5603	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	0.703
CUS_5084	CUS_7882	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.	0.717
CUS_5084	CUS_7883	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Hypothetical protein.	0.699
CUS_5084	CUS_7989	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Hypothetical protein; Identified by glimmer; putative.	0.592
CUS_5084	CUS_7991	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Conserved domain protein.	0.556
CUS_5084	CUS_7992	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.	0.464
CUS_5084	CUS_7993	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	Hypothetical protein.	0.428
CUS_5194	CUS_5084	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.675
CUS_5194	CUS_5429	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	FMN-binding domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF04205; match to protein family HMM PF07581.	0.715
CUS_5194	CUS_5603	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.	0.759
CUS_5194	CUS_7882	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.	0.769
CUS_5194	CUS_7883	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Hypothetical protein.	0.723
CUS_5194	CUS_7884	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.	0.437
CUS_5194	CUS_7989	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Hypothetical protein; Identified by glimmer; putative.	0.660
CUS_5194	CUS_7991	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Conserved domain protein.	0.718
CUS_5194	CUS_7992	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.	0.633
CUS_5194	CUS_7993	Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.	Hypothetical protein.	0.597
CUS_5429	CUS_5084	FMN-binding domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF04205; match to protein family HMM PF07581.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.681