CUS_7888 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7888

Putative asparagine synthase (glutamine-hydrolyzing). (510 aa)

Predicted Functional Partners:

asnA

0.664

CUS_7760

0.657

argG

0.654

pyrB

0.651

purA

0.632

CUS_6289

0.615

asnB

0.604

panD

0.557

CUS_5867

0.556

dapF

0.467

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5867	CUS_6289	CUS_5867	CUS_6289	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	0.648
CUS_5867	CUS_7760	CUS_5867	CUS_7760	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family.	0.713
CUS_5867	CUS_7888	CUS_5867	CUS_7888	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Putative asparagine synthase (glutamine-hydrolyzing).	0.556
CUS_5867	argG	CUS_5867	CUS_7869	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.774
CUS_5867	asnB	CUS_5867	CUS_5371	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.	0.556
CUS_5867	dapF	CUS_5867	CUS_7947	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family.	0.426
CUS_5867	panD	CUS_5867	CUS_5046	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.	0.717
CUS_5867	purA	CUS_5867	CUS_7764	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.754
CUS_5867	pyrB	CUS_5867	CUS_4918	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.728
CUS_6289	CUS_5867	CUS_6289	CUS_5867	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	0.648
CUS_6289	CUS_7760	CUS_6289	CUS_7760	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family.	0.855
CUS_6289	CUS_7888	CUS_6289	CUS_7888	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Putative asparagine synthase (glutamine-hydrolyzing).	0.615
CUS_6289	argG	CUS_6289	CUS_7869	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.868
CUS_6289	asnA	CUS_6289	CUS_7477	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Aspartate--ammonia ligase; Identified by match to protein family HMM PF03590; match to protein family HMM TIGR00669.	0.851
CUS_6289	asnB	CUS_6289	CUS_5371	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.	0.855
CUS_6289	panD	CUS_6289	CUS_5046	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.	0.767
CUS_6289	purA	CUS_6289	CUS_7764	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.865
CUS_6289	pyrB	CUS_6289	CUS_4918	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.871
CUS_7760	CUS_5867	CUS_7760	CUS_5867	Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family.	Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.	0.713
CUS_7760	CUS_6289	CUS_7760	CUS_6289	Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family.	Putative L-aspartate oxidase; Identified by match to protein family HMM PF00890.	0.855