Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7891Hypothetical protein. (83 aa)    
Predicted Functional Partners:
CUS_6746
Hypothetical protein.
  
     0.720
CUS_6609
Hypothetical protein.
  
     0.639
CUS_6285
Identified by match to protein family HMM PF00300.
  
     0.612
CUS_7755
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
     0.612
CUS_5171
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
  
     0.608
CUS_5173
Conserved domain protein.
  
     0.601
CUS_6349
Hypothetical protein.
  
     0.592
CUS_5883
Putative lipoprotein.
  
     0.566
CUS_7892
Identified by match to protein family HMM PF02632.
       0.542
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
     0.530
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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