pepF protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pepF

Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181. (600 aa)

Predicted Functional Partners:

CUS_7943

0.781

CUS_7941

0.497

CUS_7942

0.497

dut

0.494

CUS_7130

0.476

purB

0.461

ribD

0.459

CUS_5552

0.411

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5552	CUS_7130	CUS_5552	CUS_7130	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	Putative Xaa-Pro dipeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.	0.636
CUS_5552	pepF	CUS_5552	CUS_7944	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.	0.411
CUS_5552	ribD	CUS_5552	CUS_5651	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.504
CUS_7130	CUS_5552	CUS_7130	CUS_5552	Putative Xaa-Pro dipeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.	Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.	0.636
CUS_7130	pepF	CUS_7130	CUS_7944	Putative Xaa-Pro dipeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.	Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.	0.476
CUS_7941	CUS_7942	CUS_7941	CUS_7942	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.829
CUS_7941	CUS_7943	CUS_7941	CUS_7943	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	0.515
CUS_7941	dut	CUS_7941	CUS_7940	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	0.814
CUS_7941	pepF	CUS_7941	CUS_7944	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.	0.497
CUS_7942	CUS_7941	CUS_7942	CUS_7941	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	0.829
CUS_7942	CUS_7943	CUS_7942	CUS_7943	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	0.520
CUS_7942	dut	CUS_7942	CUS_7940	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	0.814
CUS_7942	pepF	CUS_7942	CUS_7944	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.	0.497
CUS_7943	CUS_7941	CUS_7943	CUS_7941	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	0.515
CUS_7943	CUS_7942	CUS_7943	CUS_7942	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.520
CUS_7943	dut	CUS_7943	CUS_7940	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	0.549
CUS_7943	pepF	CUS_7943	CUS_7944	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	Identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181.	0.781
dut	CUS_7941	CUS_7940	CUS_7941	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	Peptidase, U32 family; Identified by match to protein family HMM PF01136.	0.814
dut	CUS_7942	CUS_7940	CUS_7942	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.814
dut	CUS_7943	CUS_7940	CUS_7943	dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.	RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588.	0.549