STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7969Hypothetical protein. (175 aa)    
Predicted Functional Partners:
CUS_7407
Conserved domain protein.
  
     0.772
CUS_7710
Hypothetical protein.
  
     0.771
CUS_5362
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
     0.530
CUS_7970
Conserved domain protein.
       0.516
CUS_4686
Identified by match to protein family HMM PF08984.
  
     0.484
CUS_7850
Putative CoA-substrate-specific enzyme activase; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241.
 
     0.469
CUS_7968
Hypothetical protein; Identified by glimmer; putative.
       0.454
CUS_7851
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.
 
     0.445
CUS_7127
ErfK/YbiS/YcfS/YnhG; Identified by match to protein family HMM PF03734.
  
     0.417
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.