glnQ protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glnQ

Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005. (248 aa)

Predicted Functional Partners:

CUS_7972

0.999

CUS_7973

0.985

CUS_4991

0.982

argG

0.662

CUS_7910

0.651

CUS_5174

0.624

CUS_7974

0.540

polA

0.515

CUS_5508

0.481

CUS_6814

0.432

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4991	CUS_7972	CUS_4991	CUS_7972	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.924
CUS_4991	CUS_7973	CUS_4991	CUS_7973	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	0.694
CUS_4991	argG	CUS_4991	CUS_7869	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.850
CUS_4991	glnQ	CUS_4991	CUS_7971	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.982
CUS_5174	glnQ	CUS_5174	CUS_7971	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.624
CUS_5508	glnQ	CUS_5508	CUS_7971	Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.481
CUS_6814	glnQ	CUS_6814	CUS_7971	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.432
CUS_7910	glnQ	CUS_7910	CUS_7971	Transporter, SSS family; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.651
CUS_7972	CUS_4991	CUS_7972	CUS_4991	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	0.924
CUS_7972	CUS_7973	CUS_7972	CUS_7973	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	0.998
CUS_7972	CUS_7974	CUS_7972	CUS_7974	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Hypothetical protein; Identified by glimmer; putative.	0.551
CUS_7972	glnQ	CUS_7972	CUS_7971	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.999
CUS_7973	CUS_4991	CUS_7973	CUS_4991	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	0.694
CUS_7973	CUS_7972	CUS_7973	CUS_7972	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.998
CUS_7973	CUS_7974	CUS_7973	CUS_7974	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	Hypothetical protein; Identified by glimmer; putative.	0.551
CUS_7973	glnQ	CUS_7973	CUS_7971	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.985
CUS_7974	CUS_7972	CUS_7974	CUS_7972	Hypothetical protein; Identified by glimmer; putative.	Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.551
CUS_7974	CUS_7973	CUS_7974	CUS_7973	Hypothetical protein; Identified by glimmer; putative.	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	0.551
CUS_7974	glnQ	CUS_7974	CUS_7971	Hypothetical protein; Identified by glimmer; putative.	Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.	0.540
argG	CUS_4991	CUS_7869	CUS_4991	Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.	0.850