STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7972Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. (226 aa)    
Predicted Functional Partners:
glnQ
Glutamine ABC transporter, ATP-binding protein GlnQ; Identified by match to protein family HMM PF00005.
 0.999
CUS_7973
ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.
 0.998
CUS_4991
Arginine ABC transporter, periplasmic arginine-binding protein ArtP family protein.
 
 0.906
CUS_7974
Hypothetical protein; Identified by glimmer; putative.
       0.551
CUS_5496
ABC 3 transport family protein; Identified by match to protein family HMM PF00950.
   
 
 0.515
CUS_7320
ABC transporter, ATP-binding protein.
  
  
  0.436
CUS_7074
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
    
  0.424
CUS_5997
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; match to protein family HMM PF00909; match to protein family HMM TIGR00836; Belongs to the P(II) protein family.
   
  
 0.419
CUS_6811
ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.
   
 
 0.409
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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