Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8013Conserved domain protein. (184 aa)    
Predicted Functional Partners:
CUS_7551
Hypothetical protein.
 
     0.721
CUS_7976
Conserved domain protein.
  
     0.668
CUS_7553
Hypothetical protein.
  
     0.647
CUS_8014
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
     
 0.641
CUS_7977
PAS domain S-box protein.
  
     0.633
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
  
 
 0.625
CUS_7552
Hypothetical protein.
 
     0.624
CUS_6598
Zinc finger domain protein, LSD1 subclass.
 
     0.509
CUS_4675
SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.
  
 
 0.461
CUS_5066
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
  
     0.444
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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