STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8028Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (124 aa)    
Predicted Functional Partners:
CUS_8029
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.948
CUS_5904
Bacitracin ABC transporter, ATP-binding protein BcrA family protein; Identified by match to protein family HMM PF00005.
 
    0.778
CUS_8030
Conserved domain protein.
       0.705
CUS_8027
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    
0.673
CUS_8032
Conserved domain protein; Overlaps another CDS with the same product name.
       0.455
CUS_8033
Conserved domain protein; Overlaps another CDS with the same product name.
       0.455
CUS_8026
Hypothetical protein; Identified by glimmer; putative.
       0.400
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.