Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_8050TIGR04002 family protein. (187 aa)    
Predicted Functional Partners:
CUS_8128
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
 
 0.769
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.766
ecfA
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
 0.763
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
 
 0.730
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
 
 0.730
CUS_7319
Conserved domain protein; Overlaps another CDS with the same product name.
  
 
 0.730
CUS_5308
Conserved domain protein.
  
     0.562
CUS_8051
Purine nucleoside phosphorylase I, inosine and guanosine-specific; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
       0.420
CUS_8052
Hypothetical protein; Identified by glimmer; putative.
       0.420
CUS_8053
Acyl-ACP thioesterase; Identified by match to protein family HMM PF01643.
       0.400
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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