CUS_8058 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_8058

Identified by match to protein family HMM PF01026; match to protein family HMM PF04909. (264 aa)

Predicted Functional Partners:

CUS_8056

0.773

CUS_8057

0.773

adhE

0.557

adhE-2

0.556

CUS_5569

0.544

CUS_8059

0.518

CUS_5646

0.480

CUS_8060

0.459

CUS_8054

0.457

CUS_8055

0.457

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5569	CUS_5646	CUS_5569	CUS_5646	Hypothetical protein.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.685
CUS_5569	CUS_8058	CUS_5569	CUS_8058	Hypothetical protein.	Identified by match to protein family HMM PF01026; match to protein family HMM PF04909.	0.544
CUS_5569	adhE	CUS_5569	CUS_5484	Hypothetical protein.	Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.869
CUS_5569	adhE-2	CUS_5569	CUS_5687	Hypothetical protein.	Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.869
CUS_5646	CUS_5569	CUS_5646	CUS_5569	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Hypothetical protein.	0.685
CUS_5646	CUS_8058	CUS_5646	CUS_8058	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Identified by match to protein family HMM PF01026; match to protein family HMM PF04909.	0.480
CUS_5646	adhE	CUS_5646	CUS_5484	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.990
CUS_5646	adhE-2	CUS_5646	CUS_5687	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.990
CUS_8054	CUS_8055	CUS_8054	CUS_8055	Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.	Chain length determinant protein; Identified by match to protein family HMM PF02706.	0.995
CUS_8054	CUS_8056	CUS_8054	CUS_8056	Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.	SH3 domain protein; Identified by match to protein family HMM PF08239.	0.457
CUS_8054	CUS_8057	CUS_8054	CUS_8057	Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.	Hypothetical protein; Identified by glimmer; putative.	0.457
CUS_8054	CUS_8058	CUS_8054	CUS_8058	Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.	Identified by match to protein family HMM PF01026; match to protein family HMM PF04909.	0.457
CUS_8055	CUS_8054	CUS_8055	CUS_8054	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.	0.995
CUS_8055	CUS_8056	CUS_8055	CUS_8056	Chain length determinant protein; Identified by match to protein family HMM PF02706.	SH3 domain protein; Identified by match to protein family HMM PF08239.	0.457
CUS_8055	CUS_8057	CUS_8055	CUS_8057	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Hypothetical protein; Identified by glimmer; putative.	0.457
CUS_8055	CUS_8058	CUS_8055	CUS_8058	Chain length determinant protein; Identified by match to protein family HMM PF02706.	Identified by match to protein family HMM PF01026; match to protein family HMM PF04909.	0.457
CUS_8056	CUS_8054	CUS_8056	CUS_8054	SH3 domain protein; Identified by match to protein family HMM PF08239.	Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.	0.457
CUS_8056	CUS_8055	CUS_8056	CUS_8055	SH3 domain protein; Identified by match to protein family HMM PF08239.	Chain length determinant protein; Identified by match to protein family HMM PF02706.	0.457
CUS_8056	CUS_8057	CUS_8056	CUS_8057	SH3 domain protein; Identified by match to protein family HMM PF08239.	Hypothetical protein; Identified by glimmer; putative.	0.773
CUS_8056	CUS_8058	CUS_8056	CUS_8058	SH3 domain protein; Identified by match to protein family HMM PF08239.	Identified by match to protein family HMM PF01026; match to protein family HMM PF04909.	0.773