Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8075ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (311 aa)    
Predicted Functional Partners:
CUS_8074
Putative membrane protein.
 
  0.965
CUS_8073
Conserved domain protein; Overlaps another CDS with the same product name.
 
  
 0.935
CUS_8072
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.881
CUS_7293
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  0.865
CUS_7292
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.777
CUS_6472
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.719
CUS_6753
Putative bacteriocin ABC transporter; Identified by match to protein family HMM PF00005.
 
    
0.515
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
0.452
CUS_5872
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   
0.440
CUS_7455
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
 
 0.434
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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