Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8078Hypothetical protein. (75 aa)    
Predicted Functional Partners:
argS
arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
 
    0.951
CUS_5546
Conserved domain protein.
  
     0.755
CUS_7290
Conserved domain protein.
  
     0.750
CUS_5786
Conserved domain protein.
  
     0.731
CUS_6749
Putative membrane protein.
  
     0.728
CUS_7331
Conserved domain protein.
  
     0.725
CUS_8123
Hypothetical protein; Identified by glimmer; putative.
  
     0.724
CUS_7587
Conserved domain protein.
  
     0.722
CUS_5369
Hypothetical protein; Identified by glimmer; putative.
  
     0.707
CUS_8127
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.703
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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