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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8097DAK2 domain fusion protein YloV; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599. (552 aa)    
Predicted Functional Partners:
CUS_4950
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.992
CUS_6453
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
 0.992
CUS_8098
Identified by match to protein family HMM PF03780.
 
  
 0.977
CUS_8093
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
       0.615
CUS_8094
Conserved domain protein.
       0.615
CUS_8095
HD domain protein; Identified by match to protein family HMM PF01966.
       0.615
CUS_8096
Conserved domain protein.
       0.615
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.614
CUS_8092
Hypothetical protein.
       0.574
CUS_4626
Hydrolase, HD family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488.
 
     0.552
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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